PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_004496799.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
Family M-type_MADS
Protein Properties Length: 233aa    MW: 26250 Da    PI: 10.2435
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_004496799.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF72.63.3e-231664149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    k+ +n+sn qvtfskRr g++KKA+EL++LC+aeva+++fs+  k++ +
  XP_004496799.1 16 KKMSNESNLQVTFSKRRSGLFKKASELCTLCGAEVALVVFSPGEKVFSF 64
                    5689***************************************999887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004329.7E-34867IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.133868IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.28E-29984IPR002100Transcription factor, MADS-box
CDDcd002652.08E-37977No hitNo description
PRINTSPR004044.4E-201030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241864IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-203045IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-204566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 233 aa     Download sequence    Send to blast
MSTGRKSRGR QKIEMKKMSN ESNLQVTFSK RRSGLFKKAS ELCTLCGAEV ALVVFSPGEK  60
VFSFGHPNVD TVIDRYLSRV PPQHNGTMQF IEAHRSANVR ELNATLTQAN NQLDAEKKRG  120
DELSHLRKAT EAQFWWACPI DGMNRAQLEL FKKALEELKK LVAQHADRIV IQGAPTQTLP  180
FFVGNASTSN NPIHPHQQQV QMYPPQFFQN PMMQPHLFGF NNMGGGYGPT GFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3kov_A2e-16987179Myocyte-specific enhancer factor 2A
3kov_B2e-16987179Myocyte-specific enhancer factor 2A
3kov_I2e-16987179Myocyte-specific enhancer factor 2A
3kov_J2e-16987179Myocyte-specific enhancer factor 2A
3p57_A2e-16987179Myocyte-specific enhancer factor 2A
3p57_B2e-16987179Myocyte-specific enhancer factor 2A
3p57_C2e-16987179Myocyte-specific enhancer factor 2A
3p57_D2e-16987179Myocyte-specific enhancer factor 2A
3p57_I2e-16987179Myocyte-specific enhancer factor 2A
3p57_J2e-16987179Myocyte-specific enhancer factor 2A
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496799.11e-177PREDICTED: agamous-like MADS-box protein AGL62
SwissprotQ9FKK22e-67AGL62_ARATH; Agamous-like MADS-box protein AGL62
TrEMBLG7L6X51e-140G7L6X5_MEDTR; MADS-box transcription factor family protein
STRINGGLYMA20G27330.14e-98(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-60AGAMOUS-like 62